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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6761865_6764183_F

Intron Information:

Intron Rank:
140387
Intron Class:
major
Intron Phase:
Intron Coordinates:
6761865 - 6764183
Intron Length:
2319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTTATTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.7
0.62
1
70.1
44.8
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
60.2
0.3
1.6
71.02
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025532
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037156
6760831 - 6764338
3508