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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67829942_67831996_F

Intron Information:

Intron Rank:
145499
Intron Class:
major
Intron Phase:
Intron Coordinates:
67829942 - 67831996
Intron Length:
2055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TGCAATCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
82.8
0.74
0.9
76.8
37.3
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
48.2
-0
1.9
67.31
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028443
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022557
67829693 - 67833280
3588