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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67840834_67840942_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67840834 - 67840942
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCGC
5'SS Class:
major
3'SS Sequence:
TTCTCTGCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GCAGCCCTGACG
Flanking Amino Acid:
LGNMTDWLPDELRERIRKEE
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
54.4
44.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
72.1
0.5
1
69.1
37
Minor 5ss
33.3
-1.9
3.1
42.7
44.3
Minor BPS
46.9
-0.3
1.9
48.85
44.6

Associated Gene:

Gene:
DDX58
Ensembl Gene ID:
ENSAPLG00000015091
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041621
67840560 - 67861046
20487
ENSAPLT00000033158
67840728 - 67860849
20122
ENSAPLT00000015756
67840728 - 67860849
20122