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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67841168_67843480_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67841168 - 67843480
Intron Length:
2313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGGTCC
5'SS Class:
major
3'SS Sequence:
TTTTATTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTCCCAAACC
Flanking Amino Acid:
APPGSCGCRVYKPHLSGFLH
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.1
56.5
37.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.9
0.67
0.9
81.4
35.9
Minor 5ss
34.5
-1.8
3.3
43.1
44.2
Minor BPS
65.9
0.48
2
83.46
36.2

Associated Gene:

Gene:
DDX58
Ensembl Gene ID:
ENSAPLG00000015091
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015756
67840728 - 67860849
20122