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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67844761_67845604_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67844761 - 67845604
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CAATCTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGATGCTTAATC
Flanking Amino Acid:
NLSENLGSAAEGIGKPPPVY
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.5
0.44
0.9
61.8
39.4
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
65.2
0.46
1.8
72.02
39.2

Associated Gene:

Gene:
DDX58
Ensembl Gene ID:
ENSAPLG00000015091
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033158
67840728 - 67860849
20122
ENSAPLT00000030847
67844257 - 67861958
17702
ENSAPLT00000015756
67840728 - 67860849
20122
ENSAPLT00000041621
67840560 - 67861046
20487