Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67845719_67846808_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

67845719 - 67846808

Intron Length:

1090

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCATTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TGTTCTTCATTT

Flanking Amino Acid:

GKNALICAPTGSGKTFVSIL

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

78.7

29.9

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

74.7

0.56

74.9

32.7

Minor 5ss

32.9

-1.9

2.9

37.3

41.2

Minor BPS

56.9

0.3

1.8

76.79

40.3

Associated Gene:

Gene:

DDX58

Ensembl Gene ID:

ENSAPLG00000015091

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041621

67840560 - 67861046

20487

ENSAPLT00000033158

67840728 - 67860849

20122

ENSAPLT00000030847

67844257 - 67861958

17702

ENSAPLT00000015756

67840728 - 67860849

20122