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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67846963_67847836_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67846963 - 67847836
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATCTTTTATT
Flanking Amino Acid:
NVFKHHFERQGYSVQGISGE
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82.2
0.72
0.7
81.6
30
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
69.5
0.7
1.5
84.38
36.3

Associated Gene:

Gene:
DDX58
Ensembl Gene ID:
ENSAPLG00000015091
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033158
67840728 - 67860849
20122
ENSAPLT00000030847
67844257 - 67861958
17702
ENSAPLT00000015756
67840728 - 67860849
20122
ENSAPLT00000041621
67840560 - 67861046
20487