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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67848841_67849691_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67848841 - 67849691
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGACCACTCACT
Flanking Amino Acid:
LQRFMNKPEIDVRLVKRRIH
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
44
-0.3
2.2
65.75
43.7

Associated Gene:

Gene:
DDX58
Ensembl Gene ID:
ENSAPLG00000015091
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033158
67840728 - 67860849
20122
ENSAPLT00000030847
67844257 - 67861958
17702
ENSAPLT00000015756
67840728 - 67860849
20122
ENSAPLT00000041621
67840560 - 67861046
20487