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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67853550_67854907_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67853550 - 67854907
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGACAT
5'SS Class:
major
3'SS Sequence:
GTTTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GGCGATCTAACT
Flanking Amino Acid:
LFAKTRALVSALKKCMEENP
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
62.9
43.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.6
0.73
0.9
73.4
41.9
Minor 5ss
35.5
-1.6
3.3
53
43.9
Minor BPS
45
-0.3
1.9
58.99
43.9

Associated Gene:

Gene:
DDX58
Ensembl Gene ID:
ENSAPLG00000015091
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041621
67840560 - 67861046
20487
ENSAPLT00000033158
67840728 - 67860849
20122
ENSAPLT00000030847
67844257 - 67861958
17702
ENSAPLT00000015756
67840728 - 67860849
20122