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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67859141_67860534_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67859141 - 67860534
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAA
U12 Branch Point Sequence:
CTACAAGTAACC
Flanking Amino Acid:
CSTDDIRIIKDSHHIVLGEA
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
61
0.27
1.1
69.2
36.3
Major PPT
80
0.67
1
76.9
42.1
Minor 5ss
48.5
-0.1
2.8
67.7
43.5
Minor BPS
42.3
-0.6
2.3
55.12
42.3

Associated Gene:

Gene:
DDX58
Ensembl Gene ID:
ENSAPLG00000015091
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030847
67844257 - 67861958
17702
ENSAPLT00000015756
67840728 - 67860849
20122
ENSAPLT00000041621
67840560 - 67861046
20487
ENSAPLT00000033158
67840728 - 67860849
20122