About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67866586_67867812_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67866586 - 67867812
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCCTTAATA
Flanking Amino Acid:
SPAARYLTSRGLTPREFNSY
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.7
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
77
0.61
0.8
73.9
29.7
Minor 5ss
40.7
-1
2.9
49.5
46.5
Minor BPS
85.7
1.12
0.9
89.11
26.7

Associated Gene:

Gene:
ACO1
Ensembl Gene ID:
ENSAPLG00000015490
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016216
67863788 - 67888167
24380