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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67867956_67868636_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67867956 - 67868636
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
TGTTGTGGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTAATGATT
Flanking Amino Acid:
IKSPPFFDGLTLALQTPKTI
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
67.9
37.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
63.4
0.3
1
61.7
44.5
Minor 5ss
32
-2.1
3.3
38.4
41.8
Minor BPS
49.3
0.03
1.9
73.58
37

Associated Gene:

Gene:
ACO1
Ensembl Gene ID:
ENSAPLG00000015490
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016216
67863788 - 67888167
24380