About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67868742_67869505_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67868742 - 67869505
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACAAAATTAATG
Flanking Amino Acid:
MFKEVYQKIETVNEAWNALE
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.7
25
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.7
0.94
0.7
84.6
36
Minor 5ss
33.4
-1.9
2.9
39.9
46.1
Minor BPS
45.3
-0.5
1.8
45.91
40.2

Associated Gene:

Gene:
ACO1
Ensembl Gene ID:
ENSAPLG00000015490
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016216
67863788 - 67888167
24380