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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67871339_67874548_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67871339 - 67874548
Intron Length:
3210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAAACTACAACT
Flanking Amino Acid:
TSNPSVMLGAGLLAKKAVEA
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.91
0.7
88.4
28.3
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
46.8
-0.1
1.8
63.18
40.1

Associated Gene:

Gene:
ACO1
Ensembl Gene ID:
ENSAPLG00000015490
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016216
67863788 - 67888167
24380