Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67874709_67875935_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

67874709 - 67875935

Intron Length:

1227

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGACT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTCTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

CTCTTCTTACAG

Flanking Amino Acid:

KDFETCLGAKQGFKGFQIAP

Intron Amino Acid Position:

397

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

76.1

39.5

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

88.8

0.87

0.6

83.5

24.9

Minor 5ss

33.5

-1.9

3.5

Minor BPS

49.7

-0.1

1.8

55.39

46.1

Associated Gene:

Gene:

ACO1

Ensembl Gene ID:

ENSAPLG00000015490

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016216

67863788 - 67888167

24380