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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67881582_67883576_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67881582 - 67883576
Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTATTTTCACT
Flanking Amino Acid:
DHSIQVDFNRRSDSLQKNQD
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
72.7
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.7
0.83
0.7
78.3
35.2
Minor 5ss
33
-1.9
3.1
41.9
44.5
Minor BPS
58.5
0.35
1.8
78.29
38.3

Associated Gene:

Gene:
ACO1
Ensembl Gene ID:
ENSAPLG00000015490
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016216
67863788 - 67888167
24380