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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67883715_67886197_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67883715 - 67886197
Intron Length:
2483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTCTTTCATT
Flanking Amino Acid:
KPARVILQDFTGVPAVVDFA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
72.2
39.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
32.2
-2
3.3
39.4
39.8
Minor BPS
66.9
0.61
1.7
82.98
39.3

Associated Gene:

Gene:
ACO1
Ensembl Gene ID:
ENSAPLG00000015490
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016216
67863788 - 67888167
24380