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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67886367_67888046_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67886367 - 67888046
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
CTTACCCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TGCCTCTTACCC
Flanking Amino Acid:
NLTKLEDVRYARLPFSIRVL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
68
39.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
73
0.52
0.9
66.5
34.5
Minor 5ss
46.1
-0.4
2.5
58
46.6
Minor BPS
56
0.17
1.7
63.92
41.7

Associated Gene:

Gene:
ACO1
Ensembl Gene ID:
ENSAPLG00000015490
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016216
67863788 - 67888167
24380