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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67949285_67953498_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67949285 - 67953498
Intron Length:
4214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGACTTAAAG
Flanking Amino Acid:
SLESPAFRCEVCELHVHTDC
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.2
30.6
Major BPS
100
1.24
0.5
100
0
Major PPT
81.7
0.71
0.8
74
36.4
Minor 5ss
45.1
-0.5
2.6
58.1
46.5
Minor BPS
61.2
0.21
1.8
69.83
43

Associated Gene:

Gene:
DGKQ
Ensembl Gene ID:
ENSAPLG00000016272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016981
67918279 - 68000930
82652