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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67954426_67955801_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67954426 - 67955801
Intron Length:
1376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AAGTGCTTAATT
Flanking Amino Acid:
GMRCEWCGILAHAACYIIVT
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.2
38.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
81.8
0.72
0.8
76.7
30.9
Minor 5ss
48.1
-0.2
2.5
64.1
42.5
Minor BPS
63.8
0.51
1.8
75.39
41.6

Associated Gene:

Gene:
DGKQ
Ensembl Gene ID:
ENSAPLG00000016272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016981
67918279 - 68000930
82652