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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67955956_67959247_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67955956 - 67959247
Intron Length:
3292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTCCCTAAAAT
Flanking Amino Acid:
RISENLQAESEEDDDVDGST
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
71.6
0.54
1
72
33.1
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
67.7
0.63
1.8
87.06
38.1

Associated Gene:

Gene:
DGKQ
Ensembl Gene ID:
ENSAPLG00000016272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016981
67918279 - 68000930
82652