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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67978494_67986422_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67978494 - 67986422
Intron Length:
7929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTTATGGTA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTTCTTCATT
Flanking Amino Acid:
KPLNAVVIPEASKIPQNCWP
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.2
60.8
37.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.5
0.82
0.8
85.6
27.8
Minor 5ss
30.9
-2.2
3.5
39.6
40.3
Minor BPS
66.5
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
DGKQ
Ensembl Gene ID:
ENSAPLG00000016272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016981
67918279 - 68000930
82652