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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67996569_67997563_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67996569 - 67997563
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTGCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTCAC
U12 Branch Point Sequence:
GGGGTGGTCACT
Flanking Amino Acid:
IEGLIFINIPSWGSGADLWG
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
59.8
0.24
1.3
63.1
44.5
Major PPT
73.6
0.53
0.9
68.9
37
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
33.3
-1.2
2.6
47.91
45.1

Associated Gene:

Gene:
DGKQ
Ensembl Gene ID:
ENSAPLG00000016272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016981
67918279 - 68000930
82652