About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68029884_68039652_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68029884 - 68039652
Intron Length:
9769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGATTGTTAATT
Flanking Amino Acid:
QLEHWPHICTVEKVCTGDQI
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.6
0.58
1
75.1
38.8
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
59.3
0.37
2
76.98
39.8

Associated Gene:

Gene:
TDRD7
Ensembl Gene ID:
ENSAPLG00000003551
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003644
68020316 - 68056172
35857