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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68050428_68050580_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68050428 - 68050580
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTAACCTTAAAA
Flanking Amino Acid:
PCKGKWARVEITIIHSRRAL
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.1
0.77
0.8
81.7
34.6
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
73.4
0.73
1.4
78.99
36.4

Associated Gene:

Gene:
TDRD7
Ensembl Gene ID:
ENSAPLG00000003551
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003644
68020316 - 68056172
35857