About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68051151_68052697_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68051151 - 68052697
Intron Length:
1547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTTTCTAAAG
Flanking Amino Acid:
VTSCPEFSMKVVKQDAAKGI
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
80.7
0.69
0.9
82.5
26.7
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
50.1
-0.1
1.8
60.47
41.7

Associated Gene:

Gene:
TDRD7
Ensembl Gene ID:
ENSAPLG00000003551
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003644
68020316 - 68056172
35857