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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68053198_68053598_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68053198 - 68053598
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TCGTGTTTATTC
Flanking Amino Acid:
NKLYAAKIENHWYRVIIKGI
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
89.5
0.89
0.6
88
22
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
47.6
-0.2
2
56.95
43

Associated Gene:

Gene:
TDRD7
Ensembl Gene ID:
ENSAPLG00000003551
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003644
68020316 - 68056172
35857