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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68053760_68055877_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68053760 - 68055877
Intron Length:
2118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ACATTTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTGCTTTACAT
Flanking Amino Acid:
PFQAIRAQLAGVKSQQWSEE
Intron Amino Acid Position:
1025

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
66
0.36
0.9
58.1
42.4
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
53.7
0.19
1.8
72.3
45

Associated Gene:

Gene:
TDRD7
Ensembl Gene ID:
ENSAPLG00000003551
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003644
68020316 - 68056172
35857