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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68066517_68067437_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68066517 - 68067437
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTCACCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGCTTTTCACC
Flanking Amino Acid:
STIVNKEGLNSVIKPTQYKP
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.5
0.78
0.7
78.7
28.9
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
54.4
0.12
1.7
66.7
39.4

Associated Gene:

Gene:
TMOD1
Ensembl Gene ID:
ENSAPLG00000002916
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002973
68060469 - 68073231
12763