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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68067569_68068953_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68067569 - 68068953
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATGAT
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
LEEVNFNNIMNIPIPTLKAC
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
60.7
0.27
1.2
51.5
43.9
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
TMOD1
Ensembl Gene ID:
ENSAPLG00000002916
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002973
68060469 - 68073231
12763