About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68069794_68070576_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68069794 - 68070576
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TCTCCTCCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CTTCACTCACCT
Flanking Amino Acid:
ALEELRIDNQSQPLGNKVEM
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
64.9
0.37
1
67
29.8
Major PPT
66.6
0.37
1
67
26.8
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
48.1
-0
2
70.84
45.5

Associated Gene:

Gene:
TMOD1
Ensembl Gene ID:
ENSAPLG00000002916
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002973
68060469 - 68073231
12763