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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68082073_68084095_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68082073 - 68084095
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACTTCTTTATCT
Flanking Amino Acid:
DPEKVSYKETGIHLSPQEFH
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
75.4
37.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.3
0.77
0.9
86.6
24.9
Minor 5ss
40
-1.1
2.8
50
46.3
Minor BPS
69.6
0.69
1.6
81.9
40

Associated Gene:

Gene:
TSTD2
Ensembl Gene ID:
ENSAPLG00000002690
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002720
68077067 - 68088573
11507