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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68089057_68089294_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68089057 - 68089294
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGG
5'SS Class:
major
3'SS Sequence:
GCGCCTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
ESLICRVGEKSNSSLESNLE
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
63.2
41.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.5
0.42
0.9
65
36.3
Minor 5ss
29.2
-2.4
3.4
38.5
46.6
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
NCBP1
Ensembl Gene ID:
ENSAPLG00000016318
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017045
68088797 - 68117933
29137