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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68092824_68093373_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68092824 - 68093373
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTCAGAATT
Flanking Amino Acid:
SVTQEEDVPQVRCDWYMFAF
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
80.8
0.69
0.7
76.5
25.6
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
57.7
0.32
1.7
78.49
37.5

Associated Gene:

Gene:
NCBP1
Ensembl Gene ID:
ENSAPLG00000016318
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017045
68088797 - 68117933
29137