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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68094008_68095410_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68094008 - 68095410
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTGGT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
TADKPHPQEEYLDCLWSQIQ
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
72.2
39.5
Major BPS
70
0.5
1
59.3
39.1
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
34.5
-1.8
3.3
49.7
46.6
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
NCBP1
Ensembl Gene ID:
ENSAPLG00000016318
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017045
68088797 - 68117933
29137