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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68095627_68096189_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68095627 - 68096189
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTTTTGAACT
Flanking Amino Acid:
RMFDYTDDPEGPVMPGSHSV
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76
33.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.9
0.49
1
67.7
42.7
Minor 5ss
31.9
-2.1
3.3
43
44.6
Minor BPS
71.2
0.75
1.3
85.21
34.8

Associated Gene:

Gene:
NCBP1
Ensembl Gene ID:
ENSAPLG00000016318
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017045
68088797 - 68117933
29137