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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68097696_68100875_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68097696 - 68100875
Intron Length:
3180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TGTGCTCTAATT
Flanking Amino Acid:
KIPLNYHIVEVIFAELFQLP
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
82.1
0.72
0.7
76.1
26.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
58.5
0.35
1.8
77.07
39.9

Associated Gene:

Gene:
NCBP1
Ensembl Gene ID:
ENSAPLG00000016318
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017045
68088797 - 68117933
29137