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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68100987_68102212_F

Intron Information:

Intron Rank:
11
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
68100987 - 68102212
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AAGAAACTTTCAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAACCTTAATA
Flanking Amino Acid:
KLQPGSLPQVLAQATEMLYM
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
59.7
0.22
1.1
52.5
46
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
78.8
0.9
1.1
81.34
33.7

Associated Gene:

Gene:
NCBP1
Ensembl Gene ID:
ENSAPLG00000016318
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017045
68088797 - 68117933
29137