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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68123789_68125393_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68123789 - 68125393
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACAG
5'SS Class:
major
3'SS Sequence:
TTACGTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATGATT
Flanking Amino Acid:
HFDWATCDNCRDAEDKHKLI
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
57.1
41.7
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
0.9
69.7
41.3
Minor 5ss
37.5
-1.4
3
47.5
47.9
Minor BPS
68.1
0.65
1.5
87.5
31.3

Associated Gene:

Gene:
XPA
Ensembl Gene ID:
ENSAPLG00000016286
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016990
68121251 - 68133708
12458