About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68250643_68251391_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68250643 - 68251391
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGCGTGAG
5'SS Class:
major
3'SS Sequence:
GTTTTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TCCCCTTTGACG
Flanking Amino Acid:
MSIEIESSDVIRLIMQYL
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.1
53.2
40.2
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
84.1
0.77
0.8
78.1
30.7
Minor 5ss
26.8
-2.7
3.2
26.7
38
Minor BPS
60.5
0.18
1.4
59.52
42.9

Associated Gene:

Gene:
SMU1
Ensembl Gene ID:
ENSAPLG00000015994
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016702
68250419 - 68262806
12388