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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68251603_68251689_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68251603 - 68251689
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CGCCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CTGTCCTGAGCT
Flanking Amino Acid:
DKTLIDLYEQVVLELIELRE
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
68
0.41
0.9
60.7
35.2
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
60.5
0.41
1.8
76.87
45.4

Associated Gene:

Gene:
SMU1
Ensembl Gene ID:
ENSAPLG00000015994
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016702
68250419 - 68262806
12388