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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68251843_68252452_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68251843 - 68252452
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
AACTTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTACTTCATA
Flanking Amino Acid:
LARSYFDPREAYPDGSSKEK
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
67.3
0.39
0.8
59
37.3
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
59.8
0.3
1.9
74.71
36.9

Associated Gene:

Gene:
SMU1
Ensembl Gene ID:
ENSAPLG00000015994
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016702
68250419 - 68262806
12388