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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68260369_68260670_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68260369 - 68260670
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TGTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TGTTCTGTTACA
Flanking Amino Acid:
TVVIMNMQGQIVRSFSSGKR
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.9
31.7
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
82.2
0.72
0.9
76
38
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
51.5
0.04
2.3
71.79
40.2

Associated Gene:

Gene:
SMU1
Ensembl Gene ID:
ENSAPLG00000015994
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016702
68250419 - 68262806
12388