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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68267306_68267564_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68267306 - 68267564
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TTGATGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTGATGATTT
Flanking Amino Acid:
EKGRLIIEFRVNFPESGFLS
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
60.8
44.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74.4
0.55
1
70.5
44.3
Minor 5ss
33.4
-1.9
3.2
36.7
41.6
Minor BPS
43.5
-0.4
2.2
65.65
45.1

Associated Gene:

Gene:
DNAJA1
Ensembl Gene ID:
ENSAPLG00000015760
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016451
68266917 - 68273067
6151