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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68267666_68268096_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68267666 - 68268096
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CGTTCCTTTATT
Flanking Amino Acid:
NRTIIITSHPGQVVKHGAIK
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
78
0.63
0.8
76.9
31.7
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
68.8
0.67
1.6
80.7
41.2

Associated Gene:

Gene:
DNAJA1
Ensembl Gene ID:
ENSAPLG00000015760
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016451
68266917 - 68273067
6151