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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68269344_68271165_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68269344 - 68271165
Intron Length:
1822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTACGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTCTACGACA
Flanking Amino Acid:
KKILEVHIDKGMKDGQKITF
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
77.2
0.61
1
73.9
35.5
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
56.5
0.2
1.8
75.78
35.1

Associated Gene:

Gene:
DNAJA1
Ensembl Gene ID:
ENSAPLG00000015760
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016451
68266917 - 68273067
6151