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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68271612_68272648_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68271612 - 68272648
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
GGGRMQRERRGKNVVHQLSV
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
DNAJA1
Ensembl Gene ID:
ENSAPLG00000015760
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016451
68266917 - 68273067
6151