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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68280101_68280923_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68280101 - 68280923
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTCTCTTATCT
Flanking Amino Acid:
RLGYHAIPSMSHLHLHVISQ
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
76.1
0.59
0.9
74.2
40.7
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
66
0.58
1.6
80.81
41.1

Associated Gene:

Gene:
APTX
Ensembl Gene ID:
ENSAPLG00000015645
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016304
68273486 - 68281478
7993