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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68281028_68281323_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68281028 - 68281323
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTGGTTTTATTT
Flanking Amino Acid:
FTTEYFLNSQDVIEMVRSKG
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.2
0.7
0.9
78.1
40.1
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
48.4
-0
1.7
61.91
43.6

Associated Gene:

Gene:
APTX
Ensembl Gene ID:
ENSAPLG00000015645
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016304
68273486 - 68281478
7993