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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68288590_68288785_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68288590 - 68288785
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATTCTCTTCACT
Flanking Amino Acid:
SSPHLKSWEQEMYTSF*
Intron Amino Acid Position:
1253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
79
0.65
0.8
69.6
36.4
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
65.8
0.58
1.7
83.49
37.3

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015156
68288569 - 68315645
27077